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1. cbg-ethz/scDEF cbg-ethz/scDEF Public

   Deep exponential families for single-cell data.

   Python 21 1

2. cbg-ethz/SCATrEx cbg-ethz/SCATrEx Public

   Map single-cell transcriptomes to copy number evolutionary trees.

   Python 13 1

3. cbg-ethz/SCICoNE cbg-ethz/SCICoNE Public

   Single-cell copy number calling and event history reconstruction.

   C++ 23 8

4. tumorevo tumorevo Public

   Simulate the evolution and treatment of tumors and generate bulk, single-cell and spatial data from them.

   Jupyter Notebook 6

5. cbg-ethz/mt-SCITE cbg-ethz/mt-SCITE Public

   Tree inference from mitochondrial mutations

   Jupyter Notebook 5 1