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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 246 repositories
  • ClinicalReportGenerator Public

    a workflow for generation of Djerba Clinical Reports (generally), for RUO clinical reports (specifically)

    oicr-gsi/ClinicalReportGenerator’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 19, 2025
  • biomodalQC Public

    QC workflow for biomodal pipeline

    oicr-gsi/biomodalQC’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 17, 2025
  • vidarr-tools Public

    The home of Python tools for use with Víðarr

    oicr-gsi/vidarr-tools’s past year of commit activity
    WDL 0 1 0 0 Updated Apr 16, 2025
  • crosscheckFingerprintCaller Public

    To call sequencing library swaps and matches from CrosscheckFingerprints output given OICR metadata

    oicr-gsi/crosscheckFingerprintCaller’s past year of commit activity
    WDL 0 0 0 1 Updated Apr 16, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    oicr-gsi/pipeline-timings’s past year of commit activity
    Python 0 0 0 0 Updated Apr 16, 2025
  • gsi-wdl-tools Public
    oicr-gsi/gsi-wdl-tools’s past year of commit activity
    Python 1 0 0 0 Updated Apr 16, 2025
  • cerberus Public

    File provenance library

    oicr-gsi/cerberus’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Apr 16, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 1 Updated Apr 16, 2025
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 2 Updated Apr 16, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Apr 16, 2025
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