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@nolanlab

Garry P. Nolan Laboratory

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  1. CODEX CODEX Public

    Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java 47 12

  2. CODEXServer CODEXServer Public

    Run CODEX apps on the web: driftcompensation, deconvolution, segmentation, clustering and viewing

    Java

  3. CODEXServerSparkBuild CODEXServerSparkBuild Public

    Project to deploy the CODEX server on the left and right computers in the nolan lab.

    Java

  4. scaffold scaffold Public

    scaffold

    R 18 8

  5. vortex vortex Public

    VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    Java 34 6

  6. CODEXViewer CODEXViewer Public

    An ImageJ plugin to view and analyze CODEX images from the CODEXToolkit.

    Java 1

Repositories

Showing 10 of 36 repositories
  • SPACEc Public Forked from yuqiyuqitan/SPACEc
    nolanlab/SPACEc’s past year of commit activity
    Jupyter Notebook 5 10 0 0 Updated Jan 30, 2025
  • NeighborhoodCoordination Public

    Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

    nolanlab/NeighborhoodCoordination’s past year of commit activity
    Jupyter Notebook 57 18 2 0 Updated Nov 4, 2024
  • cytof-backer-upper Public

    Script for backing up CyTOF data to Google cloud storage

    nolanlab/cytof-backer-upper’s past year of commit activity
    Python 2 1 0 0 Updated Jul 19, 2024
  • citrus Public

    Citrus Development Code

    nolanlab/citrus’s past year of commit activity
    R 31 GPL-3.0 20 46 0 Updated Apr 14, 2024
  • REDSEA Public
    nolanlab/REDSEA’s past year of commit activity
    Jupyter Notebook 17 10 0 0 Updated Apr 5, 2024
  • VorteX_m Public
    nolanlab/VorteX_m’s past year of commit activity
    Java 0 0 0 2 Updated Jul 16, 2023
  • vortex Public

    VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    nolanlab/vortex’s past year of commit activity
    Java 34 6 21 2 Updated Apr 17, 2023
  • TissueSchematics Public

    Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"

    nolanlab/TissueSchematics’s past year of commit activity
    Jupyter Notebook 10 2 0 0 Updated Mar 3, 2023
  • RAPID Public

    RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data

    nolanlab/RAPID’s past year of commit activity
    MATLAB 12 GPL-3.0 1 1 0 Updated Dec 3, 2022
  • Rclusterpp Public

    Memory efficient clustering in R for large datasets

    nolanlab/Rclusterpp’s past year of commit activity
    C++ 22 11 7 2 Updated Aug 22, 2022
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